U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX24792846: RNA-Seq of Pseudomonas donghuensis : GacS
1 ILLUMINA (Illumina NovaSeq X) run: 29.3M spots, 8.8G bases, 2.5Gb downloads

Design: gacS bacteria grown in modified King's B Culture grown cell harvested at 8hr post-inoculation (OD .02 start)
Submitted by: University of Pittsburgh
Study: Transcriptions of GacS in Pseudomonas donghuensis strain SVBP6
show Abstracthide Abstract
We combined comparative transcriptomic, proteomic, and metabolomic approaches to identify novel GacS-dependent biosynthetic gene clusters (BGC) and/or extracellular specialized metabolites. Here, we deposit the transcriptomics that aided in pinpointed several GacS-activated gene clusters with biosynthetic functional features that had escaped in silico genome mining tools.
Sample:
SAMN41670804 • SRS21509973 • All experiments • All runs
Library:
Name: SVG1_1
Instrument: Illumina NovaSeq X
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: other
Layout: SINGLE
Runs: 1 run, 29.3M spots, 8.8G bases, 2.5Gb
Run# of Spots# of BasesSizePublished
SRR2927550229,344,7448.8G2.5Gb2024-07-16

ID:
33118184

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...